Charles Chiu, MD, PhD

Title(s)Professor, Laboratory Medicine
SchoolSchool of Medicine
Address185 Berry Street Bldg B, #2134
San Francisco CA 94158
Phone415-514-8219
ORCID ORCID Icon0000-0003-2915-2094 Additional info
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    Collapse Biography 
    Collapse Education and Training
    University of California Los AngelesM.D.2001School of Medicine
    University of California, San Francisco, CA11/2022Diversity, Equity, and Inclusion Champion Training

    Collapse Overview 
    Collapse Overview
    Charles Chiu, M.D./Ph.D. is a Professor of Laboratory Medicine and Medicine, Division of Infectious Diseases at University of California, San Francisco, Director of the UCSF-Abbott Viral Diagnostics and Discovery Center (VDDC), and Associate Director of the UCSF Clinical Microbiology Laboratory, He is a board-certified consulting infectious diseases physician at UCSF, and practices in both infectious diseases and clinical microbiology. Dr. Chiu obtained an MD and PhD in biophysics from UCLA and subsequently completed an internal medicine residency, infectious diseases fellowship, and postdoctoral research at UCSF. He heads a translational research laboratory engaged in clinical next-generation sequencing assay development for diagnosis of infectious diseases, pathogen discovery, bioinformatics software development, nanopore sequencing, and characterization of emerging infections (Lyme disease, enterovirus D68, and Zika virus). His work is supported by research grants from the NIH, Abbott Laboratories, Bay Area Lyme Disease Foundation, Global Lyme Alliance, USAID PREDICT program, UC Center for Accelerated Innovation, Sandler / Bowes Foundation, and California Initiative to Advance Precision Medicine. Dr. Chiu has authored more than 50 peer-reviewed publications, holds over 15 patents and patent applications, and serves on the scientific advisory board for Therabio, Karius, and Rubicon Genomics.
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    Collapse Research Activities and Funding
    Discovery and clinical validation of host biomarkers of disease severity and multi-system inflammatory syndrome in children (MIS-C) with Covid-19
    NIH R61HD105618Jan 1, 2021 - Nov 30, 2022
    Role: Principal Investigator
    Identification of diagnostic and prognostic host biomarkers of Zika virus infection by transcriptome profiling
    NIH R21AI129455Dec 14, 2016 - Nov 30, 2019
    Role: Principal Investigator
    Real-Time Unbiased Pathogen Detection in Febrile Illnesses by Nanopore Sequencing
    NIH R33AI120977Dec 9, 2015 - Nov 30, 2020
    Role: Principal Investigator
    Real-Time Unbiased Pathogen Detection in Febrile Illnesses by Nanopore Sequencing
    NIH R21AI120977Dec 9, 2015 - Nov 30, 2017
    Role: Principal Investigator
    Gigapixel digital PCR in Giant Unilamellar Vesicles
    NIH R01EB019453Sep 30, 2014 - Mar 31, 2023
    Role: Co-Principal Investigator
    Pan-Genomic Approaches for Comprehensive Blood Screening of Novel or Emerging Infectious Agents
    NIH R01HL105704Apr 1, 2011 - Dec 31, 2020
    Role: Principal Investigator
    A Rapid Pan-Viral Microarray Diagnostic for Category A-C Biodefense Pathogens
    NIH R56AI089532Aug 9, 2010 - Jun 30, 2013
    Role: Principal Investigator
    Virus Detection Using Microarrays and Characterization of a Novel Cardiovirus
    NIH K08AI074913Sep 1, 2008 - Jul 31, 2011
    Role: Principal Investigator

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    Collapse Clinical Trials

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Plasma Cell-free RNA Signatures of Inflammatory Syndromes in Children. medRxiv. 2024 Mar 08. Loy CJ, Servellita V, Sotomayor-Gonzalez A, Bliss A, Lenz J, Belcher E, Suslovic W, Nguyen J, Williams ME, Oseguera M, Gardiner MA, Pediatric Emergency Medicine Kawasaki Disease Research Group (PEMKDRG), CHARMS Study Group, Choi JH, Hsiao HM, Wang H, Kim J, Shimizu C, Tremoulet A, Delaney M, DeBiasi RL, Rostad CA, Burns JC, Chiu CY, Vlaminck I. PMID: 38496479; PMCID: PMC10942512.
      View in: PubMed   Mentions:
    2. Previous exposure to Spike-providing parental strains confers neutralizing immunity to XBB lineage and other SARS-CoV-2 recombinants in the context of vaccination. Emerg Microbes Infect. 2023 Dec; 12(2):2270071. Suryawanshi RK, Taha TY, McCavitt-Malvido M, Silva I, Khalid MM, Syed AM, Chen IP, Saldhi P, Sreekumar B, Montano M, Foresythe K, Tabata T, Kumar GR, Sotomayor-Gonzalez A, Servellita V, Gliwa A, Nguyen J, Kojima N, Arellanor T, Bussanich A, Hess V, Shacreaw M, Lopez L, Brobeck M, Turner F, Wang Y, Ghazarian S, Davis G, Rodriguez D, Doudna J, Spraggon L, Chiu CY, Ott M. PMID: 37869789; PMCID: PMC10619466.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsPHPublic Health
    3. Severe Neuroinvasive West Nile Virus in Association With Anti-CD20 Monotherapy for Multiple Sclerosis. Neurol Neuroimmunol Neuroinflamm. 2023 09; 10(5). Thebault S, Gandelman S, Lane C, Kim EJ, Pileggi C, Zuroff L, Yamashita LD, Schindler MK, Chiu C, Wilson MR, Berger JR, Markowitz C, Bar-Or A, Fuller R, Brandstadter R, Pruitt AA, Jacobs DA. PMID: 37562975; PMCID: PMC10414775.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    4. Transmission of yellow fever vaccine virus through blood transfusion and organ transplantation in the USA in 2021: report of an investigation. Lancet Microbe. 2023 09; 4(9):e711-e721. Gould CV, Free RJ, Bhatnagar J, Soto RA, Royer TL, Maley WR, Moss S, Berk MA, Craig-Shapiro R, Kodiyanplakkal RPL, Westblade LF, Muthukumar T, Puius YA, Raina A, Hadi A, Gyure KA, Trief D, Pereira M, Kuehnert MJ, Ballen V, Kessler DA, Dailey K, Omura C, Doan T, Miller S, Wilson MR, Lehman JA, Ritter JM, Lee E, Silva-Flannery L, Reagan-Steiner S, Velez JO, Laven JJ, Fitzpatrick KA, Panella A, Davis EH, Hughes HR, Brault AC, St George K, Dean AB, Ackelsberg J, Basavaraju SV, Chiu CY, Staples JE, Yellow Fever Vaccine Virus Transplant and Transfusion Investigation Team. PMID: 37544313.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    5. Viral load quantitation at the point-of-care with shaken digital droplet RT-LAMP. Lab Chip. 2023 07 25; 23(15):3479-3486. Weisgerber DW, Langer K, Servellita V, Xu P, Chiu CY, Abate AR. PMID: 37431299; PMCID: PMC10368152.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    6. Complement Factor I Gene Variant as a Treatable Cause of Recurrent Aseptic Neutrophilic Meningitis: A Case Report. Neurol Neuroimmunol Neuroinflamm. 2023 09; 10(5). Rolfes M, Harroud A, Zorn KC, Tubati A, Omura C, Kurtz K, Matloubian M, Berger A, Chiu CY, Wilson MR, Ramachandran PS. PMID: 37339889; PMCID: PMC10282980.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    7. Association of Culturable-Virus Detection and Household Transmission of SARS-CoV-2, California and Tennessee, 2020-2022. J Infect Dis. 2023 06 15; 227(12):1343-1347. Deyoe JE, Kelly JD, Grijalva CG, Bonenfant G, Lu S, Anglin K, Garcia-Knight M, Pineda-Ramirez J, Hagen MB, Saydah S, Abedi GR, Goldberg SA, Tassetto M, Zhang A, Donohue KC, Davidson MC, Sanchez RD, Djomaleu M, Mathur S, Shak JR, Deeks SG, Peluso MJ, Chiu CY, Zhu Y, Halasa NB, Chappell JD, Mellis A, Reed C, Andino R, Martin JN, Zhou B, Talbot HK, Midgley CM, Rolfes MA. PMID: 36705269; PMCID: PMC10266938.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    8. Phage diversity in cell-free DNA identifies bacterial pathogens in human sepsis cases. Nat Microbiol. 2023 08; 8(8):1495-1507. Haddock NL, Barkal LJ, Ram-Mohan N, Kaber G, Chiu CY, Bhatt AS, Yang S, Bollyky PL. PMID: 37308590; PMCID: PMC10911932.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    9. Nucleic acid biomarkers of immune response and cell and tissue damage in children with COVID-19 and MIS-C. Cell Rep Med. 2023 06 20; 4(6):101034. Loy CJ, Sotomayor-Gonzalez A, Servellita V, Nguyen J, Lenz J, Bhattacharya S, Williams ME, Cheng AP, Bliss A, Saldhi P, Brazer N, Streithorst J, Suslovic W, Hsieh CJ, Bahar B, Wood N, Foresythe A, Gliwa A, Bhakta K, Perez MA, Hussaini L, Anderson EJ, Chahroudi A, Delaney M, Butte AJ, DeBiasi RL, Rostad CA, De Vlaminck I, Chiu CY. PMID: 37279751; PMCID: PMC10121104.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    10. Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two African Individuals Enrolled in Blood-Borne Surveillance. Viruses. 2023 04 21; 15(4). Orf GS, Olivo A, Harris B, Weiss SL, Achari A, Yu G, Federman S, Mbanya D, James L, Mampunza S, Chiu CY, Rodgers MA, Cloherty GA, Berg MG. PMID: 37113001; PMCID: PMC10145552.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    11. Powassan Virus Infection Detected by Metagenomic Next-Generation Sequencing, Ohio, USA. Emerg Infect Dis. 2023 04; 29(4):838-841. Farrington M, Elenz J, Ginsberg M, Chiu CY, Miller S, Pangonis SF. PMID: 36958034; PMCID: PMC10045675.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    12. Adeno-associated virus type 2 in US children with acute severe hepatitis. Nature. 2023 May; 617(7961):574-580. Servellita V, Sotomayor Gonzalez A, Lamson DM, Foresythe A, Huh HJ, Bazinet AL, Bergman NH, Bull RL, Garcia KY, Goodrich JS, Lovett SP, Parker K, Radune D, Hatada A, Pan CY, Rizzo K, Bertumen JB, Morales C, Oluniyi PE, Nguyen J, Tan J, Stryke D, Jaber R, Leslie MT, Lyons Z, Hedman HD, Parashar U, Sullivan M, Wroblewski K, Oberste MS, Tate JE, Baker JM, Sugerman D, Potts C, Lu X, Chhabra P, Pediatric Hepatitis of Unknown Etiology Working Group, Ingram LA, Shiau H, Britt W, Gutierrez Sanchez LH, Ciric C, Rostad CA, Vinjé J, Kirking HL, Wadford DA, Raborn RT, St George K, Chiu CY. PMID: 36996871; PMCID: PMC10170441.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    13. Purifying selection decreases the potential for Bangui orthobunyavirus outbreaks in humans. Virus Evol. 2023; 9(1):vead018. Orf GS, Perez LJ, Meyer TV, Luk KC, Forberg K, Rodgers MA, Hadji A, James L, Mampunza S, Achari A, Yu G, Federman S, Chiu CY, McArthur CA, Cloherty GA, Berg MG. PMID: 37025159; PMCID: PMC10072187.
      View in: PubMed   Mentions: 1  
    14. Longitudinal comparison of the developing gut virome in infants and their mothers. Cell Host Microbe. 2023 02 08; 31(2):187-198.e3. Walters WA, Granados AC, Ley C, Federman S, Stryke D, Santos Y, Haggerty T, Sotomayor-Gonzalez A, Servellita V, Ley RE, Parsonnet J, Chiu CY. PMID: 36758519; PMCID: PMC9950819.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    15. Transfusion-Transmitted Cache Valley Virus Infection in a Kidney Transplant Recipient With Meningoencephalitis. Clin Infect Dis. 2023 02 08; 76(3):e1320-e1327. Al-Heeti O, Wu EL, Ison MG, Saluja RK, Ramsey G, Matkovic E, Ha K, Hall S, Banach B, Wilson MR, Miller S, Chiu CY, McCabe M, Bari C, Zimler RA, Babiker H, Freeman D, Popovitch J, Annambhotla P, Lehman JA, Fitzpatrick K, Velez JO, Davis EH, Hughes HR, Panella A, Brault A, Staples JE, Gould CV, Tanna S. PMID: 35883256; PMCID: PMC9880244.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    16. Successful Treatment of Balamuthia mandrillaris Granulomatous Amebic Encephalitis with Nitroxoline. Emerg Infect Dis. 2023 01; 29(1):197-201. Spottiswoode N, Pet D, Kim A, Gruenberg K, Shah M, Ramachandran A, Laurie MT, Zia M, Fouassier C, Boutros CL, Lu R, Zhang Y, Servellita V, Bollen A, Chiu CY, Wilson MR, Valdivia L, DeRisi JL. PMID: 36573629; PMCID: PMC9796214.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimals
    17. SARS-CoV-2 Spike triggers barrier dysfunction and vascular leak via integrins and TGF-β signaling. Nat Commun. 2022 Dec 09; 13(1):7630. Biering SB, Gomes de Sousa FT, Tjang LV, Pahmeier F, Zhu C, Ruan R, Blanc SF, Patel TS, Worthington CM, Glasner DR, Castillo-Rojas B, Servellita V, Lo NTN, Wong MP, Warnes CM, Sandoval DR, Clausen TM, Santos YA, Fox DM, Ortega V, Näär AM, Baric RS, Stanley SA, Aguilar HC, Esko JD, Chiu CY, Pak JE, Beatty PR, Harris E. PMID: 36494335; PMCID: PMC9734751.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    18. Neutralizing Immunity Induced Against the Omicron BA.1 and BA.2 Variants in Vaccine Breakthrough Infections. J Infect Dis. 2022 11 11; 226(10):1688-1698. Brazer N, Morris MK, Servellita V, Anglin K, Saldhi P, Garcia-Knight M, Bethancourt S, Sotomayor-Gonzalez A, Wang B, Foresythe A, Nguyen J, Gliwa AS, Pineda-Ramirez J, Sanchez RD, Zhang Y, Ott M, Wadford DA, Andino R, Kelly JD, Hanson C, Chiu CY. PMID: 36134603; PMCID: PMC9619439.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    19. Magnitude and Determinants of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Household Transmission: A Longitudinal Cohort Study. Clin Infect Dis. 2022 10 03; 75(Suppl 2):S193-S204. Kelly JD, Lu S, Anglin K, Garcia-Knight M, Pineda-Ramirez J, Goldberg SA, Tassetto M, Zhang A, Donohue K, Davidson MC, Romero M, Diaz Sanchez R, Djomaleu M, Mathur S, Chen JY, Forman CA, Servellita V, Montejano RD, Shak JR, Rutherford GW, Deeks SG, Abedi GR, Rolfes MA, Saydah S, Briggs-Hagen M, Peluso MJ, Chiu C, Midgley CM, Andino R, Martin JN. PMID: 35788827; PMCID: PMC9278251.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    20. Infectious viral shedding of SARS-CoV-2 Delta following vaccination: A longitudinal cohort study. PLoS Pathog. 2022 09; 18(9):e1010802. Garcia-Knight M, Anglin K, Tassetto M, Lu S, Zhang A, Goldberg SA, Catching A, Davidson MC, Shak JR, Romero M, Pineda-Ramirez J, Diaz-Sanchez R, Rugart P, Donohue K, Massachi J, Sans HM, Djomaleu M, Mathur S, Servellita V, McIlwain D, Gaudiliere B, Chen J, Martinez EO, Tavs JM, Bronstone G, Weiss J, Watson JT, Briggs-Hagen M, Abedi GR, Rutherford GW, Deeks SG, Chiu C, Saydah S, Peluso MJ, Midgley CM, Martin JN, Andino R, Kelly JD. PMID: 36095030; PMCID: PMC9499220.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCellsPHPublic Health
    21. Contact-Tracing Outcomes Among Household Contacts of Fully Vaccinated Coronavirus Disease 2019 (COVID-19) Patients: San Francisco, California, 29 January-2 July 2021. Clin Infect Dis. 2022 08 24; 75(1):e267-e275. Sachdev DD, Chew Ng R, Sankaran M, Ernst A, Hernandez KT, Servellita V, Sotomayor-Gonzalez A, Stoltey J, Cohen SE, Nguyen TQ, Chiu CY, Philip S. PMID: 34928340; PMCID: PMC8755335.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCellsPHPublic Health
    22. Author Correction: Efficacy of an inactivated Zika vaccine against virus infection during pregnancy in mice and marmosets. NPJ Vaccines. 2022 Aug 20; 7(1):99. Kim IJ, Lanthier PA, Clark MJ, De La Barrera RA, Tighe MP, Szaba FM, Travis KL, Low-Beer TC, Cookenham TS, Lanzer KG, Bernacki DT, Johnson LL, Schneck AA, Ross CN, Tardif SD, Layne-Colon D, Mdaki SD, Dick EJ, Chuba C, Gonzalez O, Brasky KM, Dutton J, Rutherford JN, Coffey LL, Singapuri A, Martin CSS, Chiu CY, Thomas SJ, Modjarrad K, Patterson JL, Blackman MA. PMID: 35987764; PMCID: PMC9392767.
      View in: PubMed   Mentions: 1  
    23. An intranasal ASO therapeutic targeting SARS-CoV-2. Nat Commun. 2022 08 03; 13(1):4503. Zhu C, Lee JY, Woo JZ, Xu L, Nguyenla X, Yamashiro LH, Ji F, Biering SB, Van Dis E, Gonzalez F, Fox D, Wehri E, Rustagi A, Pinsky BA, Schaletzky J, Blish CA, Chiu C, Harris E, Sadreyev RI, Stanley S, Kauppinen S, Rouskin S, Näär AM. PMID: 35922434; PMCID: PMC9349213.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    24. A diagnostic classifier for gene expression-based identification of early Lyme disease. Commun Med (Lond). 2022; 2:92. Servellita V, Bouquet J, Rebman A, Yang T, Samayoa E, Miller S, Stone M, Lanteri M, Busch M, Tang P, Morshed M, Soloski MJ, Aucott J, Chiu CY. PMID: 35879995; PMCID: PMC9306241.
      View in: PubMed   Mentions: 4  
    25. Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections. Genome Med. 2022 07 12; 14(1):74. Serpa PH, Deng X, Abdelghany M, Crawford E, Malcolm K, Caldera S, Fung M, McGeever A, Kalantar KL, Lyden A, Ghale R, Deiss T, Neff N, Miller SA, Doernberg SB, Chiu CY, DeRisi JL, Calfee CS, Langelier CR. PMID: 35818068; PMCID: PMC9275031.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    26. COVID-19 Variant Detection with a High-Fidelity CRISPR-Cas12 Enzyme. J Clin Microbiol. 2022 07 20; 60(7):e0026122. Fasching CL, Servellita V, McKay B, Nagesh V, Broughton JP, Sotomayor-Gonzalez A, Wang B, Brazer N, Reyes K, Streithorst J, Deraney RN, Stanfield E, Hendriks CG, Fung B, Miller S, Ching J, Chen JS, Chiu CY. PMID: 35766492; PMCID: PMC9297821.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    27. Limited cross-variant immunity from SARS-CoV-2 Omicron without vaccination. Nature. 2022 07; 607(7918):351-355. Suryawanshi RK, Chen IP, Ma T, Syed AM, Brazer N, Saldhi P, Simoneau CR, Ciling A, Khalid MM, Sreekumar B, Chen PY, Kumar GR, Montano M, Gascon R, Tsou CL, Garcia-Knight MA, Sotomayor-Gonzalez A, Servellita V, Gliwa A, Nguyen J, Silva I, Milbes B, Kojima N, Hess V, Shacreaw M, Lopez L, Brobeck M, Turner F, Soveg FW, George AF, Fang X, Maishan M, Matthay M, Morris MK, Wadford D, Hanson C, Greene WC, Andino R, Spraggon L, Roan NR, Chiu CY, Doudna JA, Ott M. PMID: 35584773; PMCID: PMC9279157.
      View in: PubMed   Mentions: 93     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    28. COVID-19 in vaccinated versus unvaccinated hematologic malignancy patients. Transpl Infect Dis. 2022 Apr 15; e13835. DeVoe C, Pandey S, Shariff D, Arora S, Henrich TJ, Yokoe DS, Langelier CR, Servellita V, Chiu C, Miller S, Babik JM, Chin-Hong P, Fung M. PMID: 35426225; PMCID: PMC9115335.
      View in: PubMed   Mentions: 2     Fields:    
    29. Unlocking capacities of genomics for the COVID-19 response and future pandemics. Nat Methods. 2022 04; 19(4):374-380. Knyazev S, Chhugani K, Sarwal V, Ayyala R, Singh H, Karthikeyan S, Deshpande D, Baykal PI, Comarova Z, Lu A, Porozov Y, Vasylyeva TI, Wertheim JO, Tierney BT, Chiu CY, Sun R, Wu A, Abedalthagafi MS, Pak VM, Nagaraj SH, Smith AL, Skums P, Pasaniuc B, Komissarov A, Mason CE, Bortz E, Lemey P, Kondrashov F, Beerenwinkel N, Lam TT, Wu NC, Zelikovsky A, Knight R, Crandall KA, Mangul S. PMID: 35396471; PMCID: PMC9467803.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCellsPHPublic Health
    30. Neutralizing immunity in vaccine breakthrough infections from the SARS-CoV-2 Omicron and Delta variants. Cell. 2022 04 28; 185(9):1539-1548.e5. Servellita V, Syed AM, Morris MK, Brazer N, Saldhi P, Garcia-Knight M, Sreekumar B, Khalid MM, Ciling A, Chen PY, Kumar GR, Gliwa AS, Nguyen J, Sotomayor-Gonzalez A, Zhang Y, Frias E, Prostko J, Hackett J, Andino R, Wadford DA, Hanson C, Doudna J, Ott M, Chiu CY. PMID: 35429436; PMCID: PMC8930394.
      View in: PubMed   Mentions: 73     Fields:    Translation:HumansCells
    31. Individualized Constellation of Killer Cell Immunoglobulin-Like Receptors and Cognate HLA Class I Ligands that Controls Natural Killer Cell Antiviral Immunity Predisposes COVID-19. Front Genet. 2022; 13:845474. Maruthamuthu S, Rajalingam K, Kaur N, Morvan MG, Soto J, Lee N, Kong D, Hu Z, Reyes K, Ng D, Butte AJ, Chiu C, Rajalingam R. PMID: 35273641; PMCID: PMC8902362.
      View in: PubMed   Mentions: 9  
    32. The B.1.427/1.429 (epsilon) SARS-CoV-2 variants are more virulent than ancestral B.1 (614G) in Syrian hamsters. PLoS Pathog. 2022 02; 18(2):e1009914. Carroll T, Fox D, van Doremalen N, Ball E, Morris MK, Sotomayor-Gonzalez A, Servellita V, Rustagi A, Yinda CK, Fritts L, Port JR, Ma ZM, Holbrook MG, Schulz J, Blish CA, Hanson C, Chiu CY, Munster V, Stanley S, Miller CJ. PMID: 35143587; PMCID: PMC8865701.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    33. Limited Cross-Variant Immunity after Infection with the SARS-CoV-2 Omicron Variant Without Vaccination. medRxiv. 2022 Feb 09. Suryawanshi RK, Chen IP, Ma T, Syed AM, Brazer N, Saldhi P, Simoneau CR, Ciling A, Khalid MM, Sreekumar B, Chen PY, Kumar GR, Montano M, Garcia-Knight MA, Sotomayor-Gonzalez A, Servellita V, Gliwa A, Nguyen J, Silva I, Milbes B, Kojima N, Hess V, Shacreaw M, Lopez L, Brobeck M, Turner F, Soveg FW, George AF, Fang X, Maishan M, Matthay M, Greene WC, Andino R, Spraggon L, Roan NR, Chiu CY, Doudna J, Ott M. PMID: 35075459; PMCID: PMC8786226.
      View in: PubMed   Mentions:
    34. Efficacy of an inactivated Zika vaccine against virus infection during pregnancy in mice and marmosets. NPJ Vaccines. 2022 Jan 27; 7(1):9. Kim IJ, Lanthier PA, Clark MJ, De La Barrera RA, Tighe MP, Szaba FM, Travis KL, Low-Beer TC, Cookenham TS, Lanzer KG, Bernacki DT, Johnson LL, Schneck AA, Ross CN, Tardif SD, Layne-Colon D, Mdaki SD, Dick EJ, Chuba C, Gonzalez O, Brasky KM, Dutton J, Rutherford JN, Coffey LL, Singapuri A, Martin CSS, Chiu CY, Thomas SJ, Modjarrad K, Patterson JL, Blackman MA. PMID: 35087081; PMCID: PMC8795414.
      View in: PubMed   Mentions: 10  
    35. Detection of SARS-CoV-2 variants by Abbott molecular, antigen, and serological tests. J Clin Virol. 2022 02; 147:105080. Rodgers MA, Olivo A, Harris BJ, Lark C, Luo X, Berg MG, Meyer TV, Mohaimani A, Orf GS, Goldstein Y, Fox AS, Hirschhorn J, Glen WB, Nolte F, Landay A, Jennings C, Moy J, Servellita V, Chiu C, Batra R, Snell LB, Nebbia G, Douthwaite S, Tanuri A, Singh L, de Oliveira T, Ahouidi A, Mboup S, Cloherty GA. PMID: 35086043; PMCID: PMC8770247.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    36. Predominance of antibody-resistant SARS-CoV-2 variants in vaccine breakthrough cases from the San Francisco Bay Area, California. Nat Microbiol. 2022 02; 7(2):277-288. Servellita V, Morris MK, Sotomayor-Gonzalez A, Gliwa AS, Torres E, Brazer N, Zhou A, Hernandez KT, Sankaran M, Wang B, Wong D, Wang C, Zhang Y, Reyes KR, Glasner D, Deng X, Streithorst J, Miller S, Frias E, Rodgers M, Cloherty G, Hackett J, Hanson C, Wadford D, Philip S, Topper S, Sachdev D, Chiu CY. PMID: 35013591.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCellsPHPublic Health
    37. The Role of Metagenomics and Next-Generation Sequencing in Infectious Disease Diagnosis. Clin Chem. 2021 12 30; 68(1):115-124. Miller S, Chiu C. PMID: 34969106.
      View in: PubMed   Mentions: 31     Fields:    Translation:Humans
    38. A Rare Bird: Diagnosis of Psittacosis Meningitis by Clinical Metagenomic Next-Generation Sequencing. Open Forum Infect Dis. 2021 Dec; 8(12):ofab555. Davar K, Wilson MR, Miller S, Chiu CY, Vijayan T. PMID: 34934772; PMCID: PMC8683260.
      View in: PubMed   Mentions: 2  
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    117. 2291. A Real-Time Sequencing Approach for Simultaneous Metagenomic and Transcriptomic-Based Diagnosis of Infectious Diseases. Open Forum Infectious Diseases. 2018 Nov 26; 5(suppl_1):s679-s679. Briggs BB, Federman FS, Deng DX, Gu GW, Yu YG, San Martin SC, Miller MS, Chiu CC. .
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    118. Publisher Correction: Experimental Zika Virus Infection in the Pregnant Common Marmoset Induces Spontaneous Fetal Loss and Neurodevelopmental Abnormalities. Sci Rep. 2018 Oct 26; 8(1):16131. Seferovic M, Sánchez-San Martín C, Tardif SD, Rutherford J, Castro ECC, Li T, Hodara VL, Parodi LM, Giavedoni L, Layne-Colon D, Tamhankar M, Yagi S, Martyn C, Reyes K, Suter MA, Aagaard KM, Chiu CY, Patterson JL. PMID: 30367092; PMCID: PMC6203817.
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    119. Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection. Annu Rev Pathol. 2019 01 24; 14:319-338. Gu W, Miller S, Chiu CY. PMID: 30355154; PMCID: PMC6345613.
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    120. Differentiation enhances Zika virus infection of neuronal brain cells. Sci Rep. 2018 09 28; 8(1):14543. Sánchez-San Martín C, Li T, Bouquet J, Streithorst J, Yu G, Paranjpe A, Chiu CY. PMID: 30266962; PMCID: PMC6162312.
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    121. Identification of high-risk human papillomavirus and Rb/E2F pathway genomic alterations in mutually exclusive subsets of colorectal neuroendocrine carcinoma. Mod Pathol. 2019 02; 32(2):290-305. Shamir ER, Devine WP, Pekmezci M, Umetsu SE, Krings G, Federman S, Cho SJ, Saunders TA, Jen KY, Bergsland E, Jones K, Kim GE, Kakar S, Chiu CY, Joseph NM. PMID: 30237525.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    122. Epidemiological and genomic characterization of community-acquired Clostridium difficile infections. BMC Infect Dis. 2018 Aug 31; 18(1):443. Thornton CS, Rubin JE, Greninger AL, Peirano G, Chiu CY, Pillai DR. PMID: 30170546; PMCID: PMC6119286.
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    123. Miscarriage and stillbirth following maternal Zika virus infection in nonhuman primates. Nat Med. 2018 08; 24(8):1104-1107. Dudley DM, Van Rompay KK, Coffey LL, Ardeshir A, Keesler RI, Bliss-Moreau E, Grigsby PL, Steinbach RJ, Hirsch AJ, MacAllister RP, Pecoraro HL, Colgin LM, Hodge T, Streblow DN, Tardif S, Patterson JL, Tamhankar M, Seferovic M, Aagaard KM, Martín CS, Chiu CY, Panganiban AT, Veazey RS, Wang X, Maness NJ, Gilbert MH, Bohm RP, Adams Waldorf KM, Gale M, Rajagopal L, Hotchkiss CE, Mohr EL, Capuano SV, Simmons HA, Mejia A, Friedrich TC, Golos TG, O'Connor DH. PMID: 29967348; PMCID: PMC6082723.
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    124. Acute Liver Failure of Indeterminate Etiology: A Comprehensive Systematic Approach by An Expert Committee to Establish Causality. Am J Gastroenterol. 2018 09; 113(9):1319. Ganger DR, Rule J, Rakela J, Bass N, Reuben A, Stravitz RT, Sussman N, Larson AM, James L, Chiu C, Lee WM, Acute Liver Failure Study Group. PMID: 29946176; PMCID: PMC9252260.
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    125. Cutting-Edge Infectious Disease Diagnostics with CRISPR. Cell Host Microbe. 2018 06 13; 23(6):702-704. Chiu C. PMID: 29902435; PMCID: PMC7105017.
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    126. Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico. Cell Host Microbe. 2018 06 13; 23(6):855-864.e7. Thézé J, Li T, du Plessis L, Bouquet J, Kraemer MUG, Somasekar S, Yu G, de Cesare M, Balmaseda A, Kuan G, Harris E, Wu CH, Ansari MA, Bowden R, Faria NR, Yagi S, Messenger S, Brooks T, Stone M, Bloch EM, Busch M, Muñoz-Medina JE, González-Bonilla CR, Wolinsky S, López S, Arias CF, Bonsall D, Chiu CY, Pybus OG. PMID: 29805095; PMCID: PMC6006413.
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    127. Polyoma virus-associated carcinomas of the urologic tract: a clinicopathologic and molecular study. Mod Pathol. 2018 09; 31(9):1429-1441. Sirohi D, Vaske C, Sanborn Z, Smith SC, Don MD, Lindsey KG, Federman S, Vankalakunti M, Koo J, Bose S, Peralta-Venturina M, Ziffle JV, Grenert JP, Miller S, Chiu C, Amin MB, Simko JP, Stohr BA, Luthringer DJ. PMID: 29765141.
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    128. Experimental Zika Virus Infection in the Pregnant Common Marmoset Induces Spontaneous Fetal Loss and Neurodevelopmental Abnormalities. Sci Rep. 2018 05 01; 8(1):6851. Seferovic M, Sánchez-San Martín C, Tardif SD, Rutherford J, Castro ECC, Li T, Hodara VL, Parodi LM, Giavedoni L, Layne-Colon D, Tamhankar M, Yagi S, Martyn C, Reyes K, Suter MA, Aagaard KM, Chiu CY, Patterson JL. PMID: 29717225; PMCID: PMC5931554.
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    129. Taxonomy of the order Mononegavirales: update 2018. Arch Virol. 2018 Aug; 163(8):2283-2294. Amarasinghe GK, Aréchiga Ceballos NG, Banyard AC, Basler CF, Bavari S, Bennett AJ, Blasdell KR, Briese T, Bukreyev A, Caì Y, Calisher CH, Campos Lawson C, Chandran K, Chapman CA, Chiu CY, Choi KS, Collins PL, Dietzgen RG, Dolja VV, Dolnik O, Domier LL, Dürrwald R, Dye JM, Easton AJ, Ebihara H, Echevarría JE, Fooks AR, Formenty PBH, Fouchier RAM, Freuling CM, Ghedin E, Goldberg TL, Hewson R, Horie M, Hyndman TH, Jiang D, Kityo R, Kobinger GP, Kondo H, Koonin EV, Krupovic M, Kurath G, Lamb RA, Lee B, Leroy EM, Maes P, Maisner A, Marston DA, Mor SK, Müller T, Mühlberger E, Ramírez VMN, Netesov SV, Ng TFF, Nowotny N, Palacios G, Patterson JL, Paweska JT, Payne SL, Prieto K, Rima BK, Rota P, Rubbenstroth D, Schwemmle M, Siddell S, Smither SJ, Song Q, Song T, Stenglein MD, Stone DM, Takada A, Tesh RB, Thomazelli LM, Tomonaga K, Tordo N, Towner JS, Vasilakis N, Vázquez-Morón S, Verdugo C, Volchkov VE, Wahl V, Walker PJ, Wang D, Wang LF, Wellehan JFX, Wiley MR, Whitfield AE, Wolf YI, Yè G, Zhang YZ, Kuhn JH. PMID: 29637429; PMCID: PMC6076851.
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    130. Metagenomic Sequencing Detects Respiratory Pathogens in Hematopoietic Cellular Transplant Patients. Am J Respir Crit Care Med. 2018 02 15; 197(4):524-528. Langelier C, Zinter MS, Kalantar K, Yanik GA, Christenson S, O'Donovan B, White C, Wilson M, Sapru A, Dvorak CC, Miller S, Chiu CY, DeRisi JL. PMID: 28686513; PMCID: PMC5821905.
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    131. Metagenomic Next-Generation Sequencing for Pathogen Detection and Identification. Advanced Techniques in Diagnostic Microbiology. 2018 Jan 1; 617-632. Miller MS, Chiu CC. .
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    132. Nanopore DNA Sequencing and Genome Assembly on the International Space Station. Sci Rep. 2017 12 21; 7(1):18022. Castro-Wallace SL, Chiu CY, John KK, Stahl SE, Rubins KH, McIntyre ABR, Dworkin JP, Lupisella ML, Smith DJ, Botkin DJ, Stephenson TA, Juul S, Turner DJ, Izquierdo F, Federman S, Stryke D, Somasekar S, Alexander N, Yu G, Mason CE, Burton AS. PMID: 29269933; PMCID: PMC5740133.
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    133. Experimental Zika Virus Inoculation in a New World Monkey Model Reproduces Key Features of the Human Infection. Sci Rep. 2017 12 07; 7(1):17126. Chiu CY, Sánchez-San Martín C, Bouquet J, Li T, Yagi S, Tamhankar M, Hodara VL, Parodi LM, Somasekar S, Yu G, Giavedoni LD, Tardif S, Patterson J. PMID: 29215081; PMCID: PMC5719425.
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    134. A composite of exhaled LTB4 , LXA4 , FeNO, and FEV1 as an "asthma classification ratio" characterizes childhood asthma. Allergy. 2018 03; 73(3):627-634. Chen LC, Tseng HM, Kuo ML, Chiu CY, Liao SL, Su KW, Tsai MH, Hua MC, Lai SH, Yao TC, Yeh KW, Wu AH, Huang JL, Huang SK. PMID: 28944471.
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    135. Neurobrucellosis: Unexpected Answer From Metagenomic Next-Generation Sequencing. J Pediatric Infect Dis Soc. 2017 Nov 24; 6(4):393-398. Mongkolrattanothai K, Naccache SN, Bender JM, Samayoa E, Pham E, Yu G, Dien Bard J, Miller S, Aldrovandi G, Chiu CY. PMID: 28062553; PMCID: PMC6251619.
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    136. Viral Surveillance in Serum Samples From Patients With Acute Liver Failure By Metagenomic Next-Generation Sequencing. Clin Infect Dis. 2017 Oct 16; 65(9):1477-1485. Somasekar S, Lee D, Rule J, Naccache SN, Stone M, Busch MP, Sanders C, Lee WM, Chiu CY. PMID: 29020199; PMCID: PMC5848299.
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    137. Diagnosis of Fatal Human Case of St. Louis Encephalitis Virus Infection by Metagenomic Sequencing, California, 2016. Emerg Infect Dis. 2017 10; 23(10):1964-1968. Chiu CY, Coffey LL, Murkey J, Symmes K, Sample HA, Wilson MR, Naccache SN, Arevalo S, Somasekar S, Federman S, Stryke D, Vespa P, Schiller G, Messenger S, Humphries R, Miller S, Klausner JD. PMID: 28930022; PMCID: PMC5621550.
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    138. Metagenomic-based Surveillance of Pacific Coast tick Dermacentor occidentalis Identifies Two Novel Bunyaviruses and an Emerging Human Ricksettsial Pathogen. Sci Rep. 2017 09 25; 7(1):12234. Bouquet J, Melgar M, Swei A, Delwart E, Lane RS, Chiu CY. PMID: 28947798; PMCID: PMC5612965.
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    139. Upregulation of Human Endogenous Retrovirus-K Is Linked to Immunity and Inflammation in Pulmonary Arterial Hypertension. Circulation. 2017 Nov 14; 136(20):1920-1935. Saito T, Miyagawa K, Chen SY, Tamosiuniene R, Wang L, Sharpe O, Samayoa E, Harada D, Moonen JAJ, Cao A, Chen PI, Hennigs JK, Gu M, Li CG, Leib RD, Li D, Adams CM, Del Rosario PA, Bill M, Haddad F, Montoya JG, Robinson WH, Fantl WJ, Nolan GP, Zamanian RT, Nicolls MR, Chiu CY, Ariza ME, Rabinovitch M. PMID: 28935667; PMCID: PMC5685911.
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    140. Correction: Correction: A Novel Rhabdovirus Associated with Acute Hemorrhagic Fever in Central Africa. PLoS Pathog. 2017 Sep; 13(9):e1006583. Grard G, Fair JN, Lee D, Slikas E, Steffen I, Muyembe JJ, Sittler T, Veeraraghavan N, Ruby JG, Wang C, Makuwa M, Mulembakani P, Tesh RB, Mazet J, Rimoin AW, Taylor T, Schneider BS, Simmons G, Delwart E, Wolfe ND, Chiu CY, Leroy EM. PMID: 28880960; PMCID: PMC5589260.
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    141. The eukaryotic gut virome in hematopoietic stem cell transplantation: new clues in enteric graft-versus-host disease. Nat Med. 2017 Sep; 23(9):1080-1085. Legoff J, Resche-Rigon M, Bouquet J, Robin M, Naccache SN, Mercier-Delarue S, Federman S, Samayoa E, Rousseau C, Piron P, Kapel N, Simon F, Socié G, Chiu CY. PMID: 28759053.
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    142. Hepatitis E Virus-Associated Meningoencephalitis in a Lung Transplant Recipient Diagnosed by Clinical Metagenomic Sequencing. Open Forum Infect Dis. 2017; 4(3):ofx121. Murkey JA, Chew KW, Carlson M, Shannon CL, Sirohi D, Sample HA, Wilson MR, Vespa P, Humphries RM, Miller S, Klausner JD, Chiu CY. PMID: 28721353; PMCID: PMC5508774.
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    143. Establishment and cryptic transmission of Zika virus in Brazil and the Americas. Nature. 2017 06 15; 546(7658):406-410. Faria NR, Quick J, Claro IM, Thézé J, de Jesus JG, Giovanetti M, Kraemer MUG, Hill SC, Black A, da Costa AC, Franco LC, Silva SP, Wu CH, Raghwani J, Cauchemez S, du Plessis L, Verotti MP, de Oliveira WK, Carmo EH, Coelho GE, Santelli ACFS, Vinhal LC, Henriques CM, Simpson JT, Loose M, Andersen KG, Grubaugh ND, Somasekar S, Chiu CY, Muñoz-Medina JE, Gonzalez-Bonilla CR, Arias CF, Lewis-Ximenez LL, Baylis SA, Chieppe AO, Aguiar SF, Fernandes CA, Lemos PS, Nascimento BLS, Monteiro HAO, Siqueira IC, de Queiroz MG, de Souza TR, Bezerra JF, Lemos MR, Pereira GF, Loudal D, Moura LC, Dhalia R, França RF, Magalhães T, Marques ET, Jaenisch T, Wallau GL, de Lima MC, Nascimento V, de Cerqueira EM, de Lima MM, Mascarenhas DL, Neto JPM, Levin AS, Tozetto-Mendoza TR, Fonseca SN, Mendes-Correa MC, Milagres FP, Segurado A, Holmes EC, Rambaut A, Bedford T, Nunes MRT, Sabino EC, Alcantara LCJ, Loman NJ, Pybus OG. PMID: 28538727; PMCID: PMC5722632.
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    144. Establishment and characterization of an oral tongue squamous cell carcinoma cell line from a never-smoking patient. Oral Oncol. 2017 06; 69:1-10. Wang SJ, Asthana S, van Zante A, Heaton CM, Phuchareon J, Stein L, Higuchi S, Kishimoto T, Chiu CY, Olshen AB, McCormick F, Tetsu O. PMID: 28559012; PMCID: PMC5479323.
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    145. First Complete Genome Sequence of Corynebacterium riegelii. Genome Announc. 2017 Mar 30; 5(13). Greninger AL, Streithorst J, Chiu CY, Miller S. PMID: 28360160; PMCID: PMC5374234.
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    146. A hospital-wide screening programme to control an outbreak of vancomycin-resistant enterococci in a large tertiary hospital in Hong Kong. Hong Kong Med J. 2017 Apr; 23(2):140-9. Lai CK, Wong SY, Lee SS, Siu HK, Chiu CY, Tsang DN, Ip MP, Hung CT. PMID: 28232642.
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    147. A mouse model of paralytic myelitis caused by enterovirus D68. PLoS Pathog. 2017 02; 13(2):e1006199. Hixon AM, Yu G, Leser JS, Yagi S, Clarke P, Chiu CY, Tyler KL. PMID: 28231269; PMCID: PMC5322875.
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    148. RNA-Seq Analysis of Gene Expression, Viral Pathogen, and B-Cell/T-Cell Receptor Signatures in Complex Chronic Disease. Clin Infect Dis. 2017 02 15; 64(4):476-481. Bouquet J, Gardy JL, Brown S, Pfeil J, Miller RR, Morshed M, Avina-Zubieta A, Shojania K, McCabe M, Parker S, Uyaguari M, Federman S, Tang P, Steiner T, Otterstater M, Holt R, Moore R, Chiu CY, Patrick DM, Complex Chronic Disease Study Group. PMID: 28172519; PMCID: PMC5850034.
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    149. Validation of Metagenomic Next-Generation Sequencing Tests for Universal Pathogen Detection. Arch Pathol Lab Med. 2017 Jun; 141(6):776-786. Schlaberg R, Chiu CY, Miller S, Procop GW, Weinstock G, Professional Practice Committee and Committee on Laboratory Practices of the American Society for Mi, Microbiology Resource Committee of the College of American Pathologists. PMID: 28169558.
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    150. Beatrice Hill Virus Represents a Novel Species in the Genus Tibrovirus (Mononegavirales: Rhabdoviridae). Genome Announc. 2017 Jan 26; 5(4). Wiley MR, Prieto K, Blasdell KR, Caì Y, Campos Lawson C, Walker PJ, Chiu CY, Palacios G, Kuhn JH. PMID: 28126935; PMCID: PMC5270694.
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    151. First Draft Genome Sequences of Neisseria sp. Strain 83E34 and Neisseria sp. Strain 74A18, Previously Identified as CDC Eugonic Fermenter 4b Species. Genome Announc. 2016 Nov 10; 4(6). Greninger AL, Streithorst J, Chiu CY, Miller S. PMID: 27834718; PMCID: PMC5105111.
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    152. Longitudinal investigation of nasopharyngeal methicillin-resistant Staphylococcus aureus colonization in early infancy: The PATCH birth cohort study. Clin Microbiol Infect. 2017 Feb; 23(2):121.e1-121.e7. Tsai MH, Chiu CY, Shih HJ, Liao SL, Hua MC, Huang SH, Yao TC, Lai SH, Huang TS, Yeh KW, Chen LC, Su KW, Lim WH, Chang YJ, Chiang CH, Huang SY, Huang JL. PMID: 27793735.
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    153. Distinct Zika Virus Lineage in Salvador, Bahia, Brazil. Emerg Infect Dis. 2016 10; 22(10):1788-92. Naccache SN, Thézé J, Sardi SI, Somasekar S, Greninger AL, Bandeira AC, Campos GS, Tauro LB, Faria NR, Pybus OG, Chiu CY. PMID: 27448188; PMCID: PMC5038429.
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    154. Complete genome sequence of sequential Pandoraea apista isolates from the same cystic fibrosis patient supports a model of chronic colonization with in vivo strain evolution over time. Diagn Microbiol Infect Dis. 2017 Jan; 87(1):1-6. Greninger AL, Streithorst J, Golden JA, Chiu CY, Miller S. PMID: 28336132.
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    155. Coinfections of Zika and Chikungunya Viruses in Bahia, Brazil, Identified by Metagenomic Next-Generation Sequencing. J Clin Microbiol. 2016 09; 54(9):2348-53. Sardi SI, Somasekar S, Naccache SN, Bandeira AC, Tauro LB, Campos GS, Chiu CY. PMID: 27413190; PMCID: PMC5005514.
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    156. Antibodies to the Novel Human Pegivirus 2 Are Associated with Active and Resolved Infections. J Clin Microbiol. 2016 08; 54(8):2023-30. Coller KE, Berg MG, Frankel M, Forberg K, Surani R, Chiu CY, Hackett J, Dawson GJ. PMID: 27225404; PMCID: PMC4963515.
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    157. Two human immunodeficiency virus Type 2 cases in US blood donors including serologic, molecular, and genomic characterization of an epidemiologically unusual case. Transfusion. 2016 06; 56(6 Pt 2):1560-8. Stramer SL, Yu G, Herron R, Espinoza N, Foster GA, Naccache SN, Brodsky JP, Ong E, Linnen JM, Dyer N, Styer LM, Parker MM, Chiu CY. PMID: 27079968.
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    158. Correction: A Novel Rhabdovirus Associated with Acute Hemorrhagic Fever in Central Africa. PLoS Pathog. 2016 Mar; 12(3):e1005503. Grard G, Fair JN, Lee D, Slikas E, Steffen I, Muyembe JJ, Sittler T, Veeraraghavan N, Ruby JG, Wang C, Makuwa M, Mulembakani P, Tesh RB, Mazet J, Rimoin AW, Taylor T, Schneider BS, Simmons G, Delwart E, Wolfe ND, Chiu CY, Leroy EM. PMID: 26991269; PMCID: PMC4798281.
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    159. Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Resistant to Fifth-Generation Cephalosporins Reveals Potential Non-mecA Mechanisms of Resistance. PLoS One. 2016; 11(2):e0149541. Greninger AL, Chatterjee SS, Chan LC, Hamilton SM, Chambers HF, Chiu CY. PMID: 26890675; PMCID: PMC4758708.
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    160. Longitudinal Transcriptome Analysis Reveals a Sustained Differential Gene Expression Signature in Patients Treated for Acute Lyme Disease. mBio. 2016 Feb 12; 7(1):e00100-16. Bouquet J, Soloski MJ, Swei A, Cheadle C, Federman S, Billaud JN, Rebman AW, Kabre B, Halpert R, Boorgula M, Aucott JN, Chiu CY. PMID: 26873097; PMCID: PMC4791844.
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    161. Erratum to: Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing. Genome Med. 2016 Jan 11; 8(1):1. Greninger AL, Messacar K, Dunnebacke T, Naccache SN, Federman S, Bouquet J, Mirsky D, Nomura Y, Yagi S, Glaser C, Vollmer M, Press CA, Kleinschmidt-DeMasters BK, Dominguez SR, Chiu CY. PMID: 26750923; PMCID: PMC4707724.
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    162. Discovery of a Novel Human Pegivirus in Blood Associated with Hepatitis C Virus Co-Infection. PLoS Pathog. 2015 Dec; 11(12):e1005325. Berg MG, Lee D, Coller K, Frankel M, Aronsohn A, Cheng K, Forberg K, Marcinkus M, Naccache SN, Dawson G, Brennan C, Jensen DM, Hackett J, Chiu CY. PMID: 26658760; PMCID: PMC4676677.
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    163. Balamuthia Mandrillaris Encephalitis Detected by Next Generation Sequencing of Cerebrospinal Fluid. Open Forum Infectious Diseases. 2015 Dec 9; 2(suppl_1). Nomura NY, Greninger GA, Messacar MK, Dunnebacke DT, Naccache NS, Bouquet BJ, Mirsky MD, Press PC, Kleinschmidt-Demasters KB, Parker PS, Dominguez DS, Chiu CC. .
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    164. Acute Flaccid Myelitis of Unknown Etiology in California, 2012-2015. JAMA. 2015 Dec 22-29; 314(24):2663-71. Van Haren K, Ayscue P, Waubant E, Clayton A, Sheriff H, Yagi S, Glenn-Finer R, Padilla T, Strober JB, Aldrovandi G, Wadford DA, Chiu CY, Xia D, Harriman K, Watt JP, Glaser CA. PMID: 26720027.
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    165. Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing. Genome Med. 2015 Dec 01; 7:113. Greninger AL, Messacar K, Dunnebacke T, Naccache SN, Federman S, Bouquet J, Mirsky D, Nomura Y, Yagi S, Glaser C, Vollmer M, Press CA, Kleinschmidt-DeMasters BK, Klenschmidt-DeMasters BK, Dominguez SR, Chiu CY. PMID: 26620704; PMCID: PMC4665321.
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    166. Utility of Metagenomic Next-Generation Sequencing for Characterization of HIV and Human Pegivirus Diversity. PLoS One. 2015; 10(11):e0141723. Luk KC, Berg MG, Naccache SN, Kabre B, Federman S, Mbanya D, Kaptué L, Chiu CY, Brennan CA, Hackett J. PMID: 26599538; PMCID: PMC4658132.
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    167. Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis. Genome Med. 2015 Sep 29; 7:99. Greninger AL, Naccache SN, Federman S, Yu G, Mbala P, Bres V, Stryke D, Bouquet J, Somasekar S, Linnen JM, Dodd R, Mulembakani P, Schneider BS, Muyembe-Tamfum JJ, Stramer SL, Chiu CY. PMID: 26416663; PMCID: PMC4587849.
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    168. Draft Genome Sequence of Mycobacterium heckeshornense Strain RLE. Genome Announc. 2015 Aug 27; 3(4). Greninger AL, Cunningham G, Chiu CY, Miller S. PMID: 26316632; PMCID: PMC4551876.
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    169. Genomic Assays for Identification of Chikungunya Virus in Blood Donors, Puerto Rico, 2014. Emerg Infect Dis. 2015 Aug; 21(8):1409-13. Chiu CY, Bres V, Yu G, Krysztof D, Naccache SN, Lee D, Pfeil J, Linnen JM, Stramer SL. PMID: 26196378; PMCID: PMC4517739.
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    170. Draft Genome Sequence of Mycobacterium heraklionense Strain Davo. Genome Announc. 2015 Jul 23; 3(4). Greninger AL, Cunningham G, Chiu CY, Miller S. PMID: 26205863; PMCID: PMC4513157.
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    171. Draft Genome Sequence of Mycobacterium elephantis Strain Lipa. Genome Announc. 2015 Jun 25; 3(3). Greninger AL, Cunningham G, Yu JM, Hsu ED, Chiu CY, Miller S. PMID: 26112791; PMCID: PMC4481289.
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    172. Draft Genome Sequence of Mycobacterium arupense Strain GUC1. Genome Announc. 2015 Jun 11; 3(3). Greninger AL, Cunningham G, Yu JM, Hsu ED, Chiu CY, Miller S. PMID: 26067970; PMCID: PMC4463534.
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    173. Draft Genome Sequence of Mycobacterium obuense Strain UC1, Isolated from Patient Sputum. Genome Announc. 2015 Jun 11; 3(3). Greninger AL, Cunningham G, Hsu ED, Yu JM, Chiu CY, Miller S. PMID: 26067960; PMCID: PMC4463524.
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    174. Two Rapidly Growing Mycobacterial Species Isolated from a Brain Abscess: First Whole-Genome Sequences of Mycobacterium immunogenum and Mycobacterium llatzerense. J Clin Microbiol. 2015 Jul; 53(7):2374-7. Greninger AL, Langelier C, Cunningham G, Keh C, Melgar M, Chiu CY, Miller S. PMID: 25926490; PMCID: PMC4473206.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansCells
    175. Idiopathic pneumonia syndrome after hematopoietic cell transplantation: evidence of occult infectious etiologies. Blood. 2015 Jun 11; 125(24):3789-97. Seo S, Renaud C, Kuypers JM, Chiu CY, Huang ML, Samayoa E, Xie H, Yu G, Fisher CE, Gooley TA, Miller S, Hackman RC, Myerson D, Sedlak RH, Kim YJ, Fukuda T, Fredricks DN, Madtes DK, Jerome KR, Boeckh M. PMID: 25918347; PMCID: PMC4463739.
      View in: PubMed   Mentions: 78     Fields:    Translation:HumansAnimals
    176. No viral association found in a set of differentiated vulvar intraepithelial neoplasia cases by human papillomavirus and pan-viral microarray testing. PLoS One. 2015; 10(4):e0125292. Saglam O, Samayoa E, Somasekar S, Naccache S, Iwasaki A, Chiu CY. PMID: 25894343; PMCID: PMC4404153.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    177. Advances in testing technology to ensure transfusion safety – NAT and beyond. ISBT Science Series. 2015 Apr 1; 10(S1):55-64. Stramer SS, Dodd DR, Chiu CC. .
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    178. A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012-14): a retrospective cohort study. Lancet Infect Dis. 2015 Jun; 15(6):671-82. Greninger AL, Naccache SN, Messacar K, Clayton A, Yu G, Somasekar S, Federman S, Stryke D, Anderson C, Yagi S, Messenger S, Wadford D, Xia D, Watt JP, Van Haren K, Dominguez SR, Glaser C, Aldrovandi G, Chiu CY. PMID: 25837569; PMCID: PMC6027625.
      View in: PubMed   Mentions: 175     Fields:    Translation:HumansCellsPHPublic Health
    179. Genome Sequence of Bivens Arm Virus, a Tibrovirus Belonging to the Species Tibrogargan virus (Mononegavirales: Rhabdoviridae). Genome Announc. 2015 Mar 19; 3(2). Lauck M, Yú SQ, Caì Y, Hensley LE, Chiu CY, O'Connor DH, Kuhn JH. PMID: 25792044; PMCID: PMC4394750.
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    180. An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data. Nucleic Acids Res. 2015 Apr 20; 43(7):e46. Deng X, Naccache SN, Ng T, Federman S, Li L, Chiu CY, Delwart EL. PMID: 25586223; PMCID: PMC4402509.
      View in: PubMed   Mentions: 150     Fields:    Translation:HumansCells
    181. Diagnosis of neuroinvasive astrovirus infection in an immunocompromised adult with encephalitis by unbiased next-generation sequencing. Clin Infect Dis. 2015 Mar 15; 60(6):919-23. Naccache SN, Peggs KS, Mattes FM, Phadke R, Garson JA, Grant P, Samayoa E, Federman S, Miller S, Lunn MP, Gant V, Chiu CY. PMID: 25572898; PMCID: PMC4345816.
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    182. DNA microarray for detection of gastrointestinal viruses. J Clin Microbiol. 2015 Jan; 53(1):136-45. Martínez MA, Soto-Del Río Mde L, Gutiérrez RM, Chiu CY, Greninger AL, Contreras JF, López S, Arias CF, Isa P. PMID: 25355758; PMCID: PMC4290912.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCells
    183. A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples. Genome Res. 2014 Jul; 24(7):1180-92. Naccache SN, Federman S, Veeraraghavan N, Zaharia M, Lee D, Samayoa E, Bouquet J, Greninger AL, Luk KC, Enge B, Wadford DA, Messenger SL, Genrich GL, Pellegrino K, Grard G, Leroy E, Schneider BS, Fair JN, Martínez MA, Isa P, Crump JA, DeRisi JL, Sittler T, Hackett J, Miller S, Chiu CY. PMID: 24899342; PMCID: PMC4079973.
      View in: PubMed   Mentions: 230     Fields:    Translation:Humans
    184. Actionable diagnosis of neuroleptospirosis by next-generation sequencing. N Engl J Med. 2014 Jun 19; 370(25):2408-17. Wilson MR, Naccache SN, Samayoa E, Biagtan M, Bashir H, Yu G, Salamat SM, Somasekar S, Federman S, Miller S, Sokolic R, Garabedian E, Candotti F, Buckley RH, Reed KD, Meyer TL, Seroogy CM, Galloway R, Henderson SL, Gern JE, DeRisi JL, Chiu CY. PMID: 24896819; PMCID: PMC4134948.
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    185. Next-Generation Sequencing for Pathogen Discovery in Meningoencephalitis (P2.306). Neurology. 2014 Apr 8; 82(10_supplement). Wilson WM, Samayoa SE, Naccache NS, Somasekar SS, Yu YG, DeRisi DJ, Chiu CC. .
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    186. Multiplexed immunoglobulin E sensitization in relation to exhaled nitric oxide in a population sample of children. Allergy. 2014 May; 69(5):678-82. Yao TC, Tsai HJ, Tu YL, Chang SW, Hua MC, Liao SL, Tsai MH, Chiu CY, Lai SH, Yeh KW, Huang JL, PATCH study group. PMID: 24576320.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimals
    187. Concerns over the origin of NIH-CQV, a novel virus discovered in Chinese patients with seronegative hepatitis. Proc Natl Acad Sci U S A. 2014 Mar 18; 111(11):E976. Naccache SN, Hackett J, Delwart EL, Chiu CY. PMID: 24572576; PMCID: PMC3964066.
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    188. Chapter 2 Bas-Congo Virus A Novel Rhabdovirus Associated with Acute Hemorrhagic Fever. Emerging Infectious Diseases. 2014 Jan 1; 13-24. Grard GG, Fair FJ, Chiu CC, Leroy LE. .
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    189. The perils of pathogen discovery: origin of a novel parvovirus-like hybrid genome traced to nucleic acid extraction spin columns. J Virol. 2013 Nov; 87(22):11966-77. Naccache SN, Greninger AL, Lee D, Coffey LL, Phan T, Rein-Weston A, Aronsohn A, Hackett J, Delwart EL, Chiu CY. PMID: 24027301; PMCID: PMC3807889.
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    190. The microbiome and Clostridium difficile infection. . 2013 Aug 27; 46-59. Chiu CC, Pillai PD. .
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    191. Rosavirus: the prototype of a proposed new genus of the Picornaviridae family. Virus Genes. 2013 Dec; 47(3):556-8. Phan TG, Vo NP, Simmonds P, Samayoa E, Naccache S, Chiu CY, Delwart E. PMID: 23943414; PMCID: PMC4160104.
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    192. Experimental cross-species infection of common marmosets by titi monkey adenovirus. PLoS One. 2013; 8(7):e68558. Yu G, Yagi S, Carrion R, Chen EC, Liu M, Brasky KM, Lanford RE, Kelly KR, Bales KL, Schnurr DP, Canfield DR, Patterson JL, Chiu CY. PMID: 23894316; PMCID: PMC3722195.
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    193. Characterization of the Bas-Congo virus glycoprotein and its function in pseudotyped viruses. J Virol. 2013 Sep; 87(17):9558-68. Steffen I, Liss NM, Schneider BS, Fair JN, Chiu CY, Simmons G. PMID: 23785218; PMCID: PMC3754090.
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    194. Viral pathogen discovery. Curr Opin Microbiol. 2013 Aug; 16(4):468-78. Chiu CY. PMID: 23725672; PMCID: PMC5964995.
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    195. The genome sequence of Lone Star virus, a highly divergent bunyavirus found in the Amblyomma americanum tick. PLoS One. 2013; 8(4):e62083. Swei A, Russell BJ, Naccache SN, Kabre B, Veeraraghavan N, Pilgard MA, Johnson BJ, Chiu CY. PMID: 23637969; PMCID: PMC3639253.
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    196. The hidden threat of unidentified agents of disease in human and veterinary biologicals. Biologicals. 2013 May; 41(3):129-30. Chiu C. PMID: 23622811; PMCID: PMC7128734.
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    197. A novel adenovirus species associated with an acute respiratory outbreak in a baboon colony and evidence of coincident human infection. mBio. 2013 Apr 16; 4(2):e00084. Chiu CY, Yagi S, Lu X, Yu G, Chen EC, Liu M, Dick EJ, Carey KD, Erdman DD, Leland MM, Patterson JL. PMID: 23592261; PMCID: PMC3634605.
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    198. A novel bocavirus in canine liver. Virol J. 2013 Feb 13; 10:54. Li L, Pesavento PA, Leutenegger CM, Estrada M, Coffey LL, Naccache SN, Samayoa E, Chiu C, Qiu J, Wang C, Deng X, Delwart E. PMID: 23402347; PMCID: PMC3577433.
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    199. Bas-Congo virus: another deadly virus? Future Microbiol. 2013 Feb; 8(2):139-41. Chiu C, Fair J, Leroy EM. PMID: 23374120.
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    200. The mitochondrial genome and a 60-kb nuclear DNA segment from Naegleria fowleri, the causative agent of primary amoebic meningoencephalitis. J Eukaryot Microbiol. 2013 Mar-Apr; 60(2):179-91. Herman EK, Greninger AL, Visvesvara GS, Marciano-Cabral F, Dacks JB, Chiu CY. PMID: 23360210; PMCID: PMC3594069.
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    201. Discovery of a novel polyomavirus in acute diarrheal samples from children. PLoS One. 2012; 7(11):e49449. Yu G, Greninger AL, Isa P, Phan TG, Martínez MA, de la Luz Sanchez M, Contreras JF, Santos-Preciado JI, Parsonnet J, Miller S, DeRisi JL, Delwart E, Arias CF, Chiu CY. PMID: 23166671; PMCID: PMC3498111.
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    202. Toward an understanding of changes in diversity associated with fecal microbiome transplantation based on 16S rRNA gene deep sequencing. mBio. 2012 Oct 23; 3(5). Shahinas D, Silverman M, Sittler T, Chiu C, Kim P, Allen-Vercoe E, Weese S, Wong A, Low DE, Pillai DR. PMID: 23093385; PMCID: PMC3482503.
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    203. A novel rhabdovirus associated with acute hemorrhagic fever in central Africa. PLoS Pathog. 2012 Sep; 8(9):e1002924. Grard G, Fair JN, Lee D, Slikas E, Steffen I, Muyembe JJ, Sittler T, Veeraraghavan N, Ruby JG, Wang C, Makuwa M, Mulembakani P, Tesh RB, Mazet J, Rimoin AW, Taylor T, Schneider BS, Simmons G, Delwart E, Wolfe ND, Chiu CY, Leroy EM. PMID: 23028323; PMCID: PMC3460624.
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    204. In-depth investigation of archival and prospectively collected samples reveals no evidence for XMRV infection in prostate cancer. PLoS One. 2012; 7(9):e44954. Lee D, Das Gupta J, Gaughan C, Steffen I, Tang N, Luk KC, Qiu X, Urisman A, Fischer N, Molinaro R, Broz M, Schochetman G, Klein EA, Ganem D, Derisi JL, Simmons G, Hackett J, Silverman RH, Chiu CY. PMID: 23028701; PMCID: PMC3445615.
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    205. Cross-species transmission of a novel adenovirus associated with a fulminant pneumonia outbreak in a new world monkey colony. PLoS Pathog. 2011 Jul; 7(7):e1002155. Chen EC, Yagi S, Kelly KR, Mendoza SP, Tarara RP, Canfield DR, Maninger N, Rosenthal A, Spinner A, Bales KL, Schnurr DP, Lerche NW, Chiu CY. PMID: 21779173; PMCID: PMC3136464.
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    206. Using a pan-viral microarray assay (Virochip) to screen clinical samples for viral pathogens. J Vis Exp. 2011 Apr 27; (50). Chen EC, Miller SA, DeRisi JL, Chiu CY. PMID: 21559002; PMCID: PMC3169278.
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    207. Viral infection in acute exacerbation of idiopathic pulmonary fibrosis. Am J Respir Crit Care Med. 2011 Jun 15; 183(12):1698-702. Wootton SC, Kim DS, Kondoh Y, Chen E, Lee JS, Song JW, Huh JW, Taniguchi H, Chiu C, Boushey H, Lancaster LH, Wolters PJ, DeRisi J, Ganem D, Collard HR. PMID: 21471095; PMCID: PMC3136996.
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    208. Pandemic (H1N1) 2009 infection in patients with hematologic malignancy. Emerg Infect Dis. 2010 Dec; 16(12):1910-7. Liu C, Schwartz BS, Vallabhaneni S, Nixon M, Chin-Hong PV, Miller SA, Chiu C, Damon L, Drew WL. PMID: 21122221; PMCID: PMC3294592.
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    209. A metagenomic analysis of pandemic influenza A (2009 H1N1) infection in patients from North America. PLoS One. 2010 Oct 18; 5(10):e13381. Greninger AL, Chen EC, Sittler T, Scheinerman A, Roubinian N, Yu G, Kim E, Pillai DR, Guyard C, Mazzulli T, Isa P, Arias CF, Hackett J, Schochetman G, Miller S, Tang P, Chiu CY. PMID: 20976137; PMCID: PMC2956640.
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    210. Identification of two novel missense mutations in the KAL1 gene in Han Chinese subjects with Kallmann Syndrome. J Endocrinol Invest. 2011 Jan; 34(1):53-9. Jap TS, Chiu CY, Lirng JF, Won GS. PMID: 20530987.
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    211. The effect of temperament and neuropsychological functioning on behavior problems in children with new-onset seizures. Epilepsy Behav. 2010 Apr; 17(4):467-73. Baum KT, Byars AW, deGrauw TJ, Dunn DW, Bates JE, Howe SR, Chiu CY, Austin JK. PMID: 20171932; PMCID: PMC2860064.
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    212. Cultivation and serological characterization of a human Theiler's-like cardiovirus associated with diarrheal disease. J Virol. 2010 May; 84(9):4407-14. Chiu CY, Greninger AL, Chen EC, Haggerty TD, Parsonnet J, Delwart E, Derisi JL, Ganem D. PMID: 20164225; PMCID: PMC2863762.
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    213. Metagenomics for the discovery of novel human viruses. Future Microbiol. 2010 Feb; 5(2):177-89. Tang P, Chiu C. PMID: 20143943.
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    214. Thoracic CT findings of novel influenza A (H1N1) infection in immunocompromised patients. Emerg Radiol. 2010 Jul; 17(4):299-307. Elicker BM, Schwartz BS, Liu C, Chen EC, Miller SA, Chiu CY, Webb WR. PMID: 20111882; PMCID: PMC2880241.
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    215. Differential bacterial dynamics promote emergent community robustness to lake mixing: an epilimnion to hypolimnion transplant experiment. Environ Microbiol. 2010 Feb; 12(2):455-66. Shade A, Chiu CY, McMahon KD. PMID: 19878266.
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    216. Bacteriologic features of surgical site infections following breast surgery. Am J Surg. 2009 Oct; 198(4):529-31. Mukhtar RA, Throckmorton AD, Alvarado MD, Ewing CA, Esserman LJ, Chiu C, Hwang ES. PMID: 19800462.
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    217. The complete genome of klassevirus - a novel picornavirus in pediatric stool. Virol J. 2009 Jun 18; 6:82. Greninger AL, Runckel C, Chiu CY, Haggerty T, Parsonnet J, Ganem D, DeRisi JL. PMID: 19538752; PMCID: PMC2709156.
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    218. The long march: a sample preparation technique that enhances contig length and coverage by high-throughput short-read sequencing. PLoS One. 2008; 3(10):e3495. Sorber K, Chiu C, Webster D, Dimon M, Ruby JG, Hekele A, DeRisi JL. PMID: 18941527; PMCID: PMC2566813.
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    219. Identification of cardioviruses related to Theiler's murine encephalomyelitis virus in human infections. Proc Natl Acad Sci U S A. 2008 Sep 16; 105(37):14124-9. Chiu CY, Greninger AL, Kanada K, Kwok T, Fischer KF, Runckel C, Louie JK, Glaser CA, Yagi S, Schnurr DP, Haggerty TD, Parsonnet J, Ganem D, DeRisi JL. PMID: 18768820; PMCID: PMC2528868.
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    220. Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: identification of a candidate etiologic agent. Virol J. 2008 Jul 31; 5:88. Kistler AL, Gancz A, Clubb S, Skewes-Cox P, Fischer K, Sorber K, Chiu CY, Lublin A, Mechani S, Farnoushi Y, Greninger A, Wen CC, Karlene SB, Ganem D, DeRisi JL. PMID: 18671869; PMCID: PMC2546392.
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    221. Utility of DNA microarrays for detection of viruses in acute respiratory tract infections in children. J Pediatr. 2008 Jul; 153(1):76-83. Chiu CY, Urisman A, Greenhow TL, Rouskin S, Yagi S, Schnurr D, Wright C, Drew WL, Wang D, Weintrub PS, Derisi JL, Ganem D. PMID: 18571541; PMCID: PMC3174048.
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    222. Streptococcus suis meningitis, United States. Emerg Infect Dis. 2008 Jan; 14(1):183-5. Lee GT, Chiu CY, Haller BL, Denn PM, Hall CS, Gerberding JL. PMID: 18258107; PMCID: PMC2600143.
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    223. Availability and immobilization of 137Cs in subtropical high mountain forest and grassland soils. J Environ Radioact. 2008 Jun; 99(6):882-9. Chiu CY, Wang CJ, Huang CC. PMID: 18164109.
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    224. Diagnosis of a critical respiratory illness caused by human metapneumovirus by use of a pan-virus microarray. J Clin Microbiol. 2007 Jul; 45(7):2340-3. Chiu CY, Alizadeh AA, Rouskin S, Merker JD, Yeh E, Yagi S, Schnurr D, Patterson BK, Ganem D, DeRisi JL. PMID: 17494722; PMCID: PMC1933008.
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    225. Microarray detection of human parainfluenzavirus 4 infection associated with respiratory failure in an immunocompetent adult. Clin Infect Dis. 2006 Oct 15; 43(8):e71-6. Chiu CY, Rouskin S, Koshy A, Urisman A, Fischer K, Yagi S, Schnurr D, Eckburg PB, Tompkins LS, Blackburn BG, Merker JD, Patterson BK, Ganem D, DeRisi JL. PMID: 16983602; PMCID: PMC7108001.
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    226. E-Predict: a computational strategy for species identification based on observed DNA microarray hybridization patterns. Genome Biol. 2005; 6(9):R78. Urisman A, Fischer KF, Chiu CY, Kistler AL, Beck S, Wang D, DeRisi JL. PMID: 16168085; PMCID: PMC1242213.
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    227. Morbidity and mortality of short-bowel syndrome in infants with abdominal wall defects. Am Surg. 2002 Jan; 68(1):75-9. Thakur A, Chiu C, Quiros-Tejeira RE, Reyen L, Ament M, Atkinson JB, Fonkalsrud EW. PMID: 12467323.
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    228. Prospective, randomized, placebo-controlled evaluation of the safety and immunogenicity of three lots of intranasal trivalent influenza vaccine among young children. Pediatr Infect Dis J. 2001 Aug; 20(8):740-6. Zangwill KM, Droge J, Mendelman P, Marcy SM, Partridge S, Chiu CY, Jing J, Chang SJ, Cho I, Ward JI. PMID: 11734734.
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    229. Structural analysis of a fiber-pseudotyped adenovirus with ocular tropism suggests differential modes of cell receptor interactions. J Virol. 2001 Jun; 75(11):5375-80. Chiu CY, Wu E, Brown SL, Von Seggern DJ, Nemerow GR, Stewart PL. PMID: 11333920; PMCID: PMC114944.
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    230. Uterine artery embolisation for treatment of fibroids: experience in Chinese women. Singapore Med J. 2001 Apr; 42(4):148-54. Chiu CY, Wong WK, Mak HL, Chan CS, Kwok CH, Chan CH, Chan MK. PMID: 11465313.
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    231. Cryo-Em Imaging of a Pseudotyped Adenovhtus with Ocular Cell Tropism. Microscopy and Microanalysis. 2000 Aug 1; 6(S2):286-287. Stewart SP, Chiu CC, Von Seggern VD, Nemerow NG. .
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    232. Digitally collected cryo-electron micrographs for single particle reconstruction. Microsc Res Tech. 2000 May 01; 49(3):224-32. Stewart PL, Cary RB, Peterson SR, Chiu CY. PMID: 10816264.
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    233. Review: resolution issues in single-particle reconstruction. J Struct Biol. 1999 Dec 01; 128(1):58-64. Stewart PL, Chiu CY, Haley DA, Kong LB, Schlessman JL. PMID: 10600559.
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    234. Structure of adenovirus complexed with its internalization receptor, alphavbeta5 integrin. J Virol. 1999 Aug; 73(8):6759-68. Chiu CY, Mathias P, Nemerow GR, Stewart PL. PMID: 10400774; PMCID: PMC112761.
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    235. A helper-independent adenovirus vector with E1, E3, and fiber deleted: structure and infectivity of fiberless particles. J Virol. 1999 Feb; 73(2):1601-8. Von Seggern DJ, Chiu CY, Fleck SK, Stewart PL, Nemerow GR. PMID: 9882366; PMCID: PMC103985.
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    236. Cryo-EM imaging of the catalytic subunit of the DNA-dependent protein kinase. J Mol Biol. 1998 Dec 11; 284(4):1075-81. Chiu CY, Cary RB, Chen DJ, Peterson SR, Stewart PL. PMID: 9837727.
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    237. Modification of a receptor-binding surface of epidermal growth factor (EGF): analogs with enhanced receptor affinity at low pH or at neutrality. Protein Eng. 1998 Jun; 11(6):473-80. Mullenbach GT, Chiu CY, Gyenes A, Blaney J, Rosenberg S, Marlowe CK, Brown S, Stratton-Thomas J, Montelione GT, George-Nascimento C, Stauber G. PMID: 9725626.
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    238. Cryo-EM visualization of an exposed RGD epitope on adenovirus that escapes antibody neutralization. EMBO J. 1997 Mar 17; 16(6):1189-98. Stewart PL, Chiu CY, Huang S, Muir T, Zhao Y, Chait B, Mathias P, Nemerow GR. PMID: 9135136; PMCID: PMC1169718.
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    239. Oligonucleotide N3'-->P5' phosphoramidates as antisense agents. Nucleic Acids Res. 1996 Apr 15; 24(8):1508-14. Gryaznov S, Skorski T, Cucco C, Nieborowska-Skorska M, Chiu CY, Lloyd D, Chen JK, Koziolkiewicz M, Calabretta B. PMID: 8628685; PMCID: PMC145826.
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    240. Enhanced antibody responses in infants given different sequences of heterogeneous Haemophilus influenzae type b conjugate vaccines. J Pediatr. 1995 Feb; 126(2):206-11. Greenberg DP, Lieberman JM, Marcy SM, Wong VK, Partridge S, Chang SJ, Chiu CY, Ward JI. PMID: 7844666.
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    241. Immunogenicity of Haemophilus influenzae type b tetanus toxoid conjugate vaccine in young infants. The Kaiser-UCLA Vaccine Study Group. J Infect Dis. 1994 Jul; 170(1):76-81. Greenberg DP, Vadheim CM, Partridge S, Chang SJ, Chiu CY, Ward JI. PMID: 8014524.
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